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1. 
   Collection

   Data from: Multiscale Estimation of Binding Kinetics Using Brownian Dynamics, Molecular Dynamics and Milestoning

   • The kinetic rate constants of four biochemically relevant ligand-receptor systems were estimated and described in a publication. This collection includes input files, output files, trajectories, and statistics associated with the study.
   • Date: 2013 to 2015
2. 
   Collection

   Data from: Multiscale Modeling Shows How 2'-deoxy-ATP Rescues Ventricular Function in Heart Failure

   • Molecular dynamics simulations of myosin (1QVI) carried out with either ATP or dATP bound from the manuscript "Multiscale modeling shows how 2'-deoxy-ATP rescues ventricular function in heart failure"
   • Date: 2020 to 2022
3. 
   Collection

   Data from: Multiscale Simulations Examining Glycan Shield Effects on Drug Binding to Influenza Neuraminidase

   • The input and output Brownian dynamics trajectories associated with this study.
   • Date: 2017 to 2020
4. 
   Collection

   Data from: Near-Inertial Surface Currents Around Islands

   • This collection contains numerical model output from a linear 1.5-layer reduced gravity model. These simulations are presented in Siegelman et al. (2022), which examines the behavior of near-inertial surface currents around circular islands.
   • Date: 2019 to 2021
5. 
   Collection

   Data from: NetSci: A Library for High Performance Biomolecular Simulation Network Analysis Computation

   • This collection contains trajectory and molecular dynamics simulation output data for NetSci: A Library for High Performance Biomolecular Simulation Network Analysis Computation.
   • Date: 2022-01-01 to 2024-04-01
6. 
   Collection

   Data from: North American Monsoon Impacts Southern California’s Coastal Low Clouds

   • This collection contains data from "North American Monsoon Impacts Southern California’s Coastal Low Clouds" (Clemesha et al. 2023). Data files include: satellite-derived Coastal Low Cloudiness (CLC) for May - September 1996 - 2020, seasonal cycle fit of CLC used to create daily anomalies, San Diego airport cloud cover, precipitable water content from 850 to 300 hPa from observations in southern and northern California, a previously published single column model radiative scheme with input and outputs files used in this study.
   • Date: May through September, 1996 to 2020
7. 
   Collection

   Data from: Observations and Modeling of Ocean Circulation in the Seychelles Plateau Region

   • This collection contains raw and processed data from a variety of velocity, pressure, temperature and salinity sensors deployed from December 2016 to March 2019 over the Seychelles Plateau and a subset of an Ocean General Circulation POP model from the South Tropical Indian Ocean.
   • Date: Data: 2015 to 2019; Model: 1993 to 2009
8. 
   Collection

   Data from: Observations of Double Diffusive Staircase Edges in the Arctic Ocean

   • CTD profiles collected in the Canada Basin with a Shallow Water Integrated Mapping System (SWIMS).
   • Date: 2015-09-18 to 2015-09-20
9. 
   Collection

   Data from: Observations of strongly modulated surface wave and wave breaking statistics at a submesoscale front

   • This collection contains data presented in Vrecica et al 2021, including an overview of a submesoscale front, wave statistics, and wave breaking statistics.
   • Date: 2018-04-17
10. 
    Collection

    Data from: Observations of surface cobbles at two southern California beaches

    • Beach elevations were surveyed quarterly between January 2008 and July 2018 on cross-shore transects from the back beach to about 8 m water depth using GPS equipped vehicles.
    • Date: 2008 to 2018
11. 
    Collection

    Data from: Observations of Surface Gravity Wave Spectra from Moving Platforms

    • This collection consists of ocean and atmospheric observations (e.g., waves and winds) collected off the coast of San Diego and San Francisco California from instrumented Boeing Liquid Robotics SV3 Wave Gliders.
    • Date: 2020-09-01 to 2021-11-04
12. 
    Collection

    Data from: Observations of Tidally Driven Turbulence over Steep, Small-scale Topography Embedded in the Tasman Slope

    • In-situ observations from the Tasman Tidal Dissipation Experiment (TTIDE) collected around a small-scale bump embedded in the continental slope of Tasmania.
    • Date: 2015-01 to 2015-03
13. 
    Collection

    Data from: Ocean Surface Salinity Response to Atmospheric River Precipitation in the California Current System

    • Oceanic and atmospheric measurements, reanalysis and modeled outputs in the California Current System.
    • Date: 1992 to 2019
14. 
    Collection

    Data from: Overcrowded Housing Reduces COVID-19 Mitigation Measures and Lowers Emotional Health Among San Diego Refugees from September to November of 2020

    • Data for the present cross-sectional study were collected between September 2020 and November 2020 as part of PANA’s biannual community survey to address the primary research question: What is the association between housing and COVID-19 vulnerability?
    • Date: 2020-09 to 2020-11
15. 
    Collection

    Data from: Plankton energy flows using a global size-structured and trait-based model

    • This collection includes a global 20 year (1990-2009) climatology of diagnostic and prognostic variables for the Size-based Plankton Ecological TRAits (MARBL-SPECTRA) model.
    • Date: 1990 to 2009
16. 
    Collection

    Data from: Prediction of Threonine-Tyrosine Kinase Receptor-Ligand Unbinding Kinetics with Multiscale Milestoning and Metadynamics

    • Heat shock protein 90 (HSP90) and threonine tyrosine kinase (TTK) simulation enabled estimation of kinetic rates (SEEKR) calculations using both steered molecular dynamics and metadynamics.
    • Date: 2022-05 to 2024-06
17. 
    Collection

    Data from: QMrebind: Incorporating quantum mechanical force field reparameterization at the ligand binding site for improved drug-target kinetics through milestoning simulations

    • The data set contains the files necessary to recalculate/reproduce the unbinding rates of ligands for the model host-guest systems and Hsp90-inhibitor complexes in the paper "QMrebind: Incorporating quantum mechanical force field reparameterization at the ligand binding site for improved drug-target kinetics through milestoning simulations."
    • Date: 2021 to 2023
18. 
    Collection

    Data from: Quantifying Bioluminescent Light Intensity in Breaking Waves using Numerical Simulations

    • This collection features velocity, volume fraction, and velocity gradient data interpolated onto a uniform Cartesian grid, along with Basilisk code for simulating breaking waves and Julia code for simulating bioluminescence.
    • Date: 2024
19. 
    Collection

    Data from: Quantifying influence of human choice on the automated detection of Drosophila behavior by a supervised machine learning algorithm

    • This data collection contains original movie files, files derived from a tracking program (FlyTracker) and a machine learning-based behavioral classification suite (JAABA), and behavior classifiers for Drosophila social behaviors. These constitute source data of our publication (Leng, X., et al., 2020, in press). With our custom codes (available at https://github.com/asahinak/Leng_Wohl_etal_2020_JAABA_vs_human_annotation), readers can reproduce all the results presented in the article.
    • Date: 2015-03 to 2018-09
20. 
    Collection

    Data from: Quantitative regional observations of the geological influence on primary sandy beaches

    • The dataset includes mapped beach elevations, and gravel/bedrock locations in GeoTIFF format.
    • Date: 2017-10-01 to 2021-03-31